SciPost Submission Page
Parallel assembly of neutral atom arrays with an SLM using linear phase interpolation
by Ivo H. A. Knottnerus, Yu Chih Tseng, Alexander Urech, Robert J. C. Spreeuw, Florian Schreck
This is not the latest submitted version.
Submission summary
| Authors (as registered SciPost users): | Ivo Knottnerus |
| Submission information | |
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| Preprint Link: | https://arxiv.org/abs/2501.01391v3 (pdf) |
| Code repository: | https://github.com/StrontiumGroup/SLMSorting/ |
| Data repository: | https://uvaauas.figshare.com/articles/dataset/Datapackage_for_Parallel_assembly_of_neutral_atom_arrays_with_an_SLM_using_linear_phase_interpolation_/28166483?file=51549938 |
| Date submitted: | April 30, 2025, 9:03 a.m. |
| Submitted by: | Ivo Knottnerus |
| Submitted to: | SciPost Physics |
| Ontological classification | |
|---|---|
| Academic field: | Physics |
| Specialties: |
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| Approach: | Experimental |
Abstract
We present fast parallel rearrangement of single atoms in optical tweezers into arbitrary geometries by updating holograms displayed by an ultra fast spatial light modulator. Using linear interpolation of the tweezer position and the optical phase between the start and end arrays, we can calculate and display holograms every few ms, limited by technology. To show the versatility of our method, we sort the same atomic sample into multiple geometries with success probabilities of 0.996(2) per rearrangement cycle. This makes the method a useful tool for rearranging large atom arrays for quantum computation and quantum simulation.
Author indications on fulfilling journal expectations
- Provide a novel and synergetic link between different research areas.
- Open a new pathway in an existing or a new research direction, with clear potential for multi-pronged follow-up work
- Detail a groundbreaking theoretical/experimental/computational discovery
- Present a breakthrough on a previously-identified and long-standing research stumbling block
Author comments upon resubmission
probability of imaging and rearrangement. This gives a better understanding of the low loss observed from this rearrangement method and helps in extrapolations to other experiments or larger arrays. In that light, we have also quantified the paragraph on scaling
up to larger arrays. Last, we redid the benchmarking with more data points to remove artifacts in the results and more clearly show the nearly constant scaling with number of tweezers for the hologram calculation.
List of changes
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Added Appendix A. Experimental Details;
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Added Appendix B. Data Analysis;
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Changed from reporting the imaging and rearrangement success to an isolated rearrangement success probability as calculated with the formulas presented in the appendix on the data analysis. Added corrected rearrangement success probabilities at all relevant place;
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Quantified better the paragraph on scaling up by including a small example of the expected success rate in a first rearrangement for thousands of atoms. Also included some numbers for why this is not realistic on our apparatus with 813-nm light;
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Reran the benchmarking that is presented to figure 6. By taking care that the computer was not running any other processes, repeating the run in different orders and including more data points, most of the artifacts in the old data have been removed. Updated the numbers with the results;
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Rewritten the expression for the Fourier unit such that it is clearer what the magnified length of the SLM means. Corrected the value of the magnification as well to 0.41 instead of 0.31;
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Corrected other typos (most notably: the SLM product number);
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Added references to relevant papers.
Current status:
Reports on this Submission
Report #3 by Anonymous (Referee 4) on 2025-6-9 (Invited Report)
- Cite as: Anonymous, Report on arXiv:2501.01391v3, delivered 2025-06-09, doi: 10.21468/SciPost.Report.11363
Report
by Ivo H. A. Knottnerus, Yu Chih Tseng, Alexander Urech, Robert J. C. Spreeuw, and Florian Schreck
This study introduces a new method for the rapid rearrangement of neutral atom arrays using a spatial light modulator (SLM), leveraging direct Fourier transform calculations that account for both the intensity and optical phase of each tweezer. Compared to conventional approaches based on the Gerchberg–Saxton (GS) algorithm, this technique achieves significantly improved computational speed and rearrangement success rates. In particular, the method shares conceptual similarities with the concurrently developed work “AI-Enabled Rapid Assembly of Thousands of Defect-Free Neutral Atom Arrays with Constant-Time-Overhead” by the USTC group (Ref. [42], cited on p.11), and demonstrates experimental performance on arrays of up to 36 traps, with simulation benchmarks showing constant computational times even for systems exceeding 2400 tweezers.
The proposed method effectively overcomes key limitations of GS-based SLM rearrangement, particularly by reducing computational time and minimizing atom loss. This advancement facilitates efficient large-scale atom array rearrangement without incurring additional time overhead. Leveraging the inherent parallelism of SLMs, the approach presents a promising alternative to AOD-based techniques, particularly in high-density configurations. The authors further investigate the role of optical phase by applying linear interpolation between initial and final configurations, and assess success probabilities as a function of frame intervals—thereby identifying key factors contributing to intensity flicker and atom loss.
In that regards, we conclude that this manuscript is worthy of being published with some improvements suggested below:
Comments and Suggestions:
(1) A quantitative benchmark would strengthen the manuscript—for instance, identifying the array size or regime at which the proposed method surpasses AOD-based rearrangement in transport speed. A direct performance comparison with the GS algorithm would also be valuable in demonstrating the method’s practical benefits.
(2) In Figure 3, it would be helpful to include visual markers for trap and atom positions, similar to those in Figure 2, to enhance clarity and consistency.
(3) The argument in Chapter 3 and Figure 4(b) regarding atom loss due to phase differences could be further substantiated by including plots of the inter-frame phase differences. Correlating these with the intensity flicker observed in Figure 4(a) would reinforce the proposed interpretation.
Recommendation
Ask for major revision
Dear Referee,
Thank you for the great suggestions. We have taken them into consideration and adjusted the manuscript accordingly. Specifically, we added a more quantitative discussion on the scaling arguments presented in the discussion. As you can see in the attached document, a detailed discussion would require a lengthy discussion. We therefore chose to give a comparison with two recent examples. Furthermore, we added the ROIs in Fig.3 as per your request. Regarding the correlation, we found ourselves unable to make a quantitative correlation in Fig.4, as further elaborated on in the attached document.
We hope that these adjustments address your concerns appropriately.
Best regards, on behalf of the authors,
Ivo Knottnerus
Attachment:
Report #2 by Anonymous (Referee 3) on 2025-6-5 (Invited Report)
- Cite as: Anonymous, Report on arXiv:2501.01391v3, delivered 2025-06-05, doi: 10.21468/SciPost.Report.11339
Strengths
1- SLM re-arrangement has important implications for preparing atomic arrays as it is expected to scale with atoms numbers. This work demonstrated a great improvement from previous achievements, with the smart, simple and clearly explained idea of linear interpolation of the tweezers phase.
2- It was a pleasure to read the paper and it should become a must-read for anyone working with holographic arrays of tweezers.
Weaknesses
1- A study of the minimal step size required to successfully move the atom would have been a nice addition to the presented results.
Report
The core idea of “linear phase interpolation” is very well explained (one of my master-level student could reproduce the work based on the paper explanation), and its importance is effectively demonstrated in Figure 4. The more subtle point of aligning the phase mask “center” and optical axis is also nicely highlighted in Figure 5.
The potential scalability to 1000s tweezers is well supported in Figure 6.
It would have been interesting to have a more detailed study of how to choose the minimal step size when moving a tweezers from one spot to the next. This could be left for future work though, as the main point of this paper is rather to point the importance of controlling the tweezers phase during displacement.
Overall, the work is a significant technical improvement, and I enjoyed much reading the paper as the underlying ideas are clearly conveyed to the reader.
The paper should definitely be published in SciPost Physics following the minor modification requested.
Requested changes
(1) I would like to read the following numbers in the paper: the size of the tweezers and the minimum step size (the expression lambda*f/mL is given in the paper, but one cannot compute it as L is not given). I feel they are important for the reader to visualize quantitatively how small are the changes between 2 holograms. Currently, only a qualitative comment is given (“overlap between consecutive tweezers”).
(2) Is there laser-cooling during the re-arrangement? If yes, this should be mentioned explicitly. If not, could this help to make larger steps and thus reduce the re-arrangement time?
(3) The re-arrangement time is dominated by the SLM refresh rate, but 30% is from the memory transfer. Could the authors comment briefly if this could be improved by implementing Direct Memory Transfer between the GPU and the SLM (bypassing the CPU)? What is the limit set by the PCIe bus bandwidth?
Recommendation
Publish (easily meets expectations and criteria for this Journal; among top 50%)
Dear Referee,
Thank you for the positive words and suggestions. We have taken your requested changes into consideration and adjusted the manuscript accordingly. We have implemented the first point and explicitly state the sizes. Furthermore, we do not use laser cooling, for reasons explained in the accompanying document, but we nevertheless think that larger steps are possible. A detailed investigation would require significant effort, so we leave it to further work. Finally, we provide in the attached document some calculations on the final limits with the current hardware.
We hope that these adjustments satisfy your requests.
Best regards, on behalf of the authors,
Ivo Knottnerus

Ivo Knottnerus on 2025-04-17 [id 5384]
Dear Editor,
Please find attached also a redlined version of the manuscript, where the changes are marked in red and where possible, text from the previous version is striped out. Note that this version does not have figures, because it was otherwise too large for the upload in the file attachment.
Best Regards,
Ivo
Attachment:
250414_SLM_Sorting_wChanges.pdf
Ivo Knottnerus on 2025-04-17 [id 5383]
Dear Editor,
Please find attached the list of changes to the manuscript. A more extensive motivation on the changes based on the referee report on the first version is attached to a reply to their report. Thank you for your work on our manuscript. We look forward to hearing from you.
Best Regards,
Ivo
Attachment:
Changes_to_the_manuscript.pdf